![]() ![]() test:build : run the mocha tests on the public API of the lib (on a built bundle).npm run test:js -g "my test name" runs tests on only the matching test cases.test:js : run the mocha tests on the public API of the lib (directly on source files).The library can be built on node>=6, but the library's bundle can be tested on node>=0.10. Tests can alternatively be run on a built bundle. The default test scripts run directly agasinst the source code. dist : update the distribution js for npm etc.good for testing cytoscape in another project (with a "cytoscape": "file./path/to/cytoscape" reference in your project's package.json).watch:umd : automatically build prod umd bundle (no sourcemap, with babel).good for testing performance or for testing out of date browsers.watch:babel : automatically build lib for debugging (with sourcemap, with babel, a bit slower).served on or the first available port thereafter, with livereload on debug/index.html.good for general testing on debug/index.html.watch : automatically build lib for debugging (with sourcemap, no babel, very quick).docs : build the docs into documentation.build:esm : do the esm (ES 2015 modules) build.build:umd : do the umd (cjs/amd/globals) build.build:min : do the unminified build with bundled dependencies (for simple html pages, good for novices).build: do all builds of the library (umd, min, umd, esm).To cite Cytoscape.js in a paper, please cite the Oxford Bioinformatics issue:Ĭytoscape.js: a graph theory library for visualisation and analysisįranz M, Lopes CT, Huck G, Dong Y, Sumer O, Bader GDīioinformatics (2016) 32 (2): 309-311 first published online Septemdoi:10.1093/bioinformatics/btv557 (PDF) This allows for rapid releases of first- and third-party contributions. Contributing to Cytoscape.jsįeature releases are made at the start of each month, while patch releases are made at the start of each week. You can use the milestones to see what's currently planned for future releases. Roadmapįuture versions of Cytoscape.js are planned in the milestones of the Github issue tracker. You can find the documentation and downloads on the project website. Learn more about the features of Cytoscape.js by reading its documentation. Interaction types.Var cy = cytoscape ( ) Reconstruction methods do not provide any information about the nature of their SIREN allows biologists to use independent expressionĭata to predict interaction types for known gene regulatory networks where The user to easily consider it as a complementary approach for many network We introduce SIREN, aįast and memory efficient tool with low computational complexity, that allows Utilizing an information theory basedĬoncept, SIREN seeks to identify the interaction type of pairs of genes byĮxamining their corresponding gene expression profiles. Signing of Regulatory Networks (SIREN) plugin for Cytoscape isĪn open-source Java tool for discrimination of interaction type (activatory or Knowledge of interaction types in biological networks is important for data Bader Download PDF Abstract: Integrating expression data with gene interactions in a network is essentialįor understanding the functional organization of the cells. Authors: Jason Montojo, Pegah Khosravi, Vahid H.
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